PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopim10g079380.0.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family HSF
Protein Properties Length: 256aa    MW: 29902.8 Da    PI: 8.0031
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopim10g079380.0.1genomeCSHLView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.82e-34241152102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl k+y ++ed++++++isw+++g++f+v ++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+k+++++         weF+++ F+kg+k+
  Sopim10g079380.0.1  24 FLLKTYMLVEDPATDDVISWNSDGSAFIVRQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKITTNQ---------WEFSNDLFRKGDKD 105
                         9****************************************************************988.........************** PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i+rkk 
  Sopim10g079380.0.1 106 LLCDIRRKKA 115
                         ********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.0E-3517108IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.48E-3320113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5020113IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3124113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-182447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-187587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MGDLEDECER NLLEYVRKAS TPPFLLKTYM LVEDPATDDV ISWNSDGSAF IVRQPAEFAR  60
DLLPTLFKHS NFSSFVRQLN TYGFRKITTN QWEFSNDLFR KGDKDLLCDI RRKKARTNKQ  120
QPNKNIRKES EDEDQKSSSS TYNSSSSFEY NSLVDENKRL KMENGELSYE LSLVNKKCKD  180
LIDLVAILSK KSKEEEKKEG QKGKRPMLFG VRLEVEEEIE RKRKRVEFNE IASLFLSQTM  240
QIKIGKEDIY YRTIE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A1e-21191132106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A1e-21191132106HEAT-SHOCK TRANSCRIPTION FACTOR
5d8k_B1e-21221133105Heat shock factor protein 2
5d8l_B1e-21221133105Heat shock factor protein 2
5d8l_D1e-21221133105Heat shock factor protein 2
5d8l_F1e-21221133105Heat shock factor protein 2
5d8l_H1e-21221133105Heat shock factor protein 2
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2445990.0AC244599.4 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone hba-35a7 map 10, complete sequence.
GenBankHG9755220.0HG975522.1 Solanum lycopersicum chromosome ch10, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004249739.10.0PREDICTED: heat stress transcription factor B-3-like
SwissprotO222307e-64HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLK4D2H90.0K4D2H9_SOLLC; Uncharacterized protein
STRINGSolyc10g079380.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA44232241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-55heat shock transcription factor B3